Installation

Description

The MedHSI package allows you to read and process Hyper-Spectral Images (HSI) captured with a TopCon Spectroradiometer (.h5 files).

This package contains two branches :

• medHSIMat branch for MATLAB 2020
  • Used for data import, preprocessing, normalization, dimension reduction and graphics production
• medHSIpy branch for python 3.8
  • Used classification and segmentation tasks

Before installation

Prepare relevant MATLAB dependencies

• Option 1: Manual installation
  • delimread details, download
  • imoverlay details, download
  • regionGrowing details, download
  • regiongrowing details, download
  • spectralcolor details, download
  • SuperPCA details, download
• Option 2: Bulk installation
  1. Open MATLAB and navigate to folder ..//medHSI//medHSImat//setup
  2. Install necessary dependencies by runnning

     script 'setup_matlab.m'

Installation

• Download the package from GitHub
  • You can clone or download a .zip file at https://github.com/foxelas/medHSI
• (Optional) Run demo
  • Move demo folder outside medHSI folder
  • Add demo folder to matlab path
  • Replace conf/config.ini with setup/demos/config.ini
  • Run

    script 'Tutorial_ReadDataset.m'